Factors that accelerate dimethylamine formation in dark muscle of three gadoid species during frozen storage

We investigated factors that accelerate dimethylamine formation in gadoid dark muscle. The degradation rate of trimethylamine-N-oxide into dimethylamine and formaldehyde during frozen storage was compared between ordinary muscle and dark muscle from walleye pollock, southern blue whiting, and hoki. Dimethylamine was generated faster in dark muscle than in ordinary muscle in each species, and it was produced most abundantly in hoki dark muscle compared with the other two species. We investigated the mechanism that caused dimethylamine to be generated more abundantly in dark muscle during frozen storage, and found that the amount of dark muscle nonheme iron, which catalyzes trimethylamine-N-oxide degradation, was higher than that in ordinary muscle in each species, and hoki dark muscle in particular contained the highest levels of nonheme iron among these three species. Moreover, dark muscle in all three fish species had a higher taurine content (known to accelerate dimethylamine formation) than ordinary muscle. These data suggested two candidate factors, namely nonheme iron and taurine, that may accelerate dimethylamine generation during frozen storage. In addition, gel filtration results suggested that walleye pollock dark muscle contains as yet unidentified low-molecular-weight agents that stably accelerate dimethylamine generation.     

Quantitative analysis of <Emphasis Type="Italic">Ichthyobodo salmonis</Emphasis> an ectoparasitic flagellate infecting juvenile chum salmon <Emphasis Type="Italic">Oncorhynchus keta</Emphasis> in hatcheries

Ichthyobodosis caused by the ectoparasitic flagellate Ichthyobodo salmonis is a significant cause of mortality in juvenile chum salmon Oncorhynchus keta reared in hatcheries of northern Japan. The present study established a real-time quantitative polymerase chain reaction assay (qPCR) of I. salmonis ribosomal DNA (rDNA) using SYBR Green. This assay allows monitoring of parasite infections for the epidemiological study and control of ichthyobodosis in hatcheries. qPCR showed high reproducibility for measurements between 1.0 and 1.0 × 10⁸ rDNA copy/μl. There was a significant positive correlation between the number of parasites and the amount of I. salmonis rDNA. A survey using the qPCR assay indicated that infection by I. salmonis was present in 23 of 87 hatcheries; parasite loads were estimated to be between 50 and 750 parasites/g juvenile body weight. These results demonstrate that our qPCR assay enables the surveying of juvenile chum salmon reared in hatcheries for infection by I. salmonis.     

Experimental evidence on prevention of infection by the ectoparasitic protozoans Ichthyobodo salmonis and Trichodina truttae in juvenile chum salmon using ultraviolet disinfection of rearing water

In northern Japan, juvenile chum salmon Oncorhynchus keta (Walbaum) are released from hatcheries to enhance the fishery resource. Infections with ectoparasitic protozoans, particularly the flagellate Ichthyobodo salmonis and the ciliate Trichodina truttae, occasionally cause severe mortality among hatchery‐reared juveniles. This study examined the susceptibility of the two parasites to wide‐ranging UV irradiation (experiment 1) and then investigated whether UV disinfection of the rearing water using a commercial device was useful for preventing infections among juveniles in a small‐scale rearing system over a 28‐day period (experiment 2). In experiment 1, parasite mortality reached 100% with UV irradiation doses of ≥9.60 × 10⁵ μW s/cm² for I. salmonis and ≥8.40 × 10⁵ μW s/cm² for T. truttae. In experiment 2, disinfection of the rearing water at a UV irradiation dose of 2.2 × 10⁶ μW s/cm² succeeded in complete prevention of both parasites in the juvenile salmon. These results elucidate the minimum dose of UV irradiation for inactivation of I. salmonis and T. truttae, and demonstrate the usefulness of water disinfection using a commercial UV irradiation device to prevent infections by these parasites in hatchery‐reared juvenile chum salmon.     

Carbon dioxide flux and soil carbon stock as affected by crop residue management and soil texture in semi‐arid maize croplands in Tanzania

Crop residue management strategies must be adapted for improving carbon (C) balance and soil C stock in agroecosystems in sub‐Saharan Africa with consideration of the crop residue availability and site‐specific soil characteristics. We conducted field experiments to determine the effects of crop residue application method (incorporation/mulching) and quality (maize/cowpea) and N fertilizer application on the soil respiration rate and soil C stock in the surface soil layer (0–15 cm) in maize croplands with contrasting soil textures (clay/sandy) over 2 years from 2012 to 2014 in Tanzania. At the clay site, the incorporation of maize residues showed a 38% increase in CO₂ flux compared to mulching, whereas, at the sandy site, mulching showed a 16% increase compared to the incorporation. At the sandy site, mulching practice retained soil moisture content and apparently enhanced the decomposition of the original soil organic C in the surface layer. It is, therefore, suggested that mulching practice may accelerate a long‐term depletion of soil C stock at the sandy site. The cowpea residue incorporation led to rapid decomposition because of its high biodegradability at both sites. The N fertilizer application stimulated the decomposition of labile soil organic matter. The soil C stock in the surface layer did not significantly change after the 2‐year experiment, irrespective of crop residue treatment and soil type. In conclusion, adequate crop residue management in terms of suppressing CO₂ flux during a cropping season depends on soil type, but the long‐term effect on soil C stock is unclear.     

Soil properties that determine the mortality and growth of Haloxylon aphyllum in the Aral region,Kazakhstan

Black saxaul (Haloxylon aphyllum) is a native tree species tolerant of aridity and salinity. It is planted to alleviate environmental damage due to the formation of the Aralkum desert and improve vegetation of the Aral Sea region. To investigate the environmental factors that determine seedling mortality and growth after rooting, we focused on soil properties and topographic factors in a study plot. We found that a hard clay layer that was low in hydraulic conductivity underlay accumulated sandy sediments at different depths. The soil in low seedling mortality areas was consistently sandy and low in salinity from the surface to a depth of 100 cm. In areas of high seedling mortality (75–100%), soils with a high content of silt and clay, with high salinity were detected within 100 cm depths. This suggests that accumulated sand sediment over a depth of 100 cm is required for root development. Plant height was positively correlated with depth of the hard clay layer. Significant relationships with plant height were also detected in chemical and physical properties at 80–100 cm such as electric conductivity (ECe), sodium adsorption ratio (SAR), and sand ratio. However, these properties had no significant relationship at 0–20 cm or with the relative elevation of the plot, suggesting that the subsequent growth of seedlings depends more on the sub-soil environment than on-surface conditions. The assessment of sub-soil condition is recommended to make site selection for reforestation much more reliable.     

Effects of climatic and soil properties on cellulose decomposition rates in temperate and tropical forests

Cellulose decomposition experiments were conducted under field conditions to analyze the effects of climatic and soil properties on rates of organic matter decomposition in temperate and tropical forests. The mass loss rates of cellulose filter papers buried in the soil surface were measured to estimate the respiratory C fluxes caused by cellulose decomposition and mean residence time (MRT) of cellulose. The rates of cellulose decomposition increased with soil temperature, except for during the dry season, while rate constants of decomposition (normalized for temperature) decreased with decreasing pH because of lower cellulase activity. The estimated MRTs of soil cellulosic carbohydrates varied from 81 to 495 days for the temperate forests and from 31 to 61 days for the tropical forests. As a major organic substrate, the C fluxes from cellulose decomposition can account for a substantial fraction of heterotrophic (basal) soil respiration. However, the respiratory C fluxes can be limited by the low substrate availability and low pH in tropical soils, despite high microbial activity. The rate-regulating factors of cellulose decomposition, i.e., temperature, soil pH, and substrate availability, can accordingly influence the rates of heterotrophic soil respiration.     

First isolation of rose yellow mosaic virus in Japan

Rose yellow mosaic virus, which belongs to the Roymovirus genus in the Potyviridae family, was isolated here in Japan from a rose cultivar, Irish Mist. The full-length genomic sequence was similar to a strain in Minnesota, United States, which was the first ever isolated, with 85% nucleotide and 94% amino acid sequence similarities. Unlike the Minnesota strain, which lacks 220 nt including the 6K1 protein region, the Japanese isolate contains this coding region, which is commonly found in those of the Potyviridae.

     

Conserving Forests in Privatized Commons: Trends and Management Options in an Ifugao Village,Philippines

This study addresses the question, ‘How can remaining forests be conserved when these are already individually privatized, and when the people prefer landuses other than forestry?’ These changes in landuse and forest ownership are demonstrated through a case study of a village in Ifugao, Philippines. A rapid and continued conversion of forest into agricultural land is observed, particularly for vegetable farming. Traditionally, most of the village total land area was under communal land ownership, but now almost half is under de facto private ownership. This transition in land (including forest) ownership is generally attributed to increased demand for land which is further attributed to changes in peoples’ values towards wealth accumulation rather than redistribution, greater integration to the market economy and a shift towards commercial agriculture. Past forest policies have been ineffective in regulating the landuse largely because they have not reflected local reality, and this appears to be true with the present national forest management strategy of community-based forest management. It is argued that the granting of land titles will improve forest conservation because it will improve the enforcement of forest laws and related contractual agreements. Based on the reality of private land ownership, it is further argued that forest policy in IP land should include private (individual, family or household) forest management. Given the possibility that indigenous people may prefer landuses other than forestry or may sell their property for various reasons, policies should regulate landuse as well as make it legal for IPs to transfer rights of ownership to ‘outsiders’. There is scope to improve the implementation of the Indigenous Peoples Rights Act in the Philippines.     

Establishment of an Invasive Prostate Cancer Model in Transgenic Rats by Intermittent Testosterone Administration

We have established a transgenic rat for adenocarcinoma of the prostate (TRAP) model that features uniform adenocarcinoma development in prostatic lobes at high incidence within a short experimental period. However, no invasive carcinomas with reactive stroma characteristics similar to those in man were observed. We therefore have focused on a new model for invasive carcinoma of the prostate using TRAP rats. In experiment 1, male TRAP rats in groups 1 and 2 were treated with orchiectomy at day 0 of the experiment. Rats in groups 1–3 underwent testosterone propionate (TP) implantation from weeks 1 to 4 and from weeks 6 to 16. Rats in groups 1 and 3 were given 3,2’-dimethyl-4-aminobiphenyl (DMAB) after TP implantation. The rats of group 4 served as controls. In experiment 2, the rats were divided into three groups, none of which received DMAB or orchiectomy, treated with TP continuously or with the treatment withdrawn once or twice. In experiment 1, invasive adenocarcinomas with abundant collagenous stroma were found in the dorsolateral and anterior prostate, some of which showed perineural space invasion at week 16. The number of invasive carcinoma foci was most frequent in group 3. In experiment 2, invasive adenocarcinoma development in the lateral prostates was correlated with the number of TP administration/withdrawal cycles. In conclusion, our newly established rat model for invasive adenocarcinoma of the prostate could serve as a useful preclinical model for evaluating the in vivo efficacy of preventive and therapeutic agents targeting of the tumor microenvironment.     

Up-regulation of NOD1 and NOD2 through TLR4 and TNF-alpha in LPS-treated murine macrophages

NOD1 (Card4) and NOD2 (Card15) are thought to be responsible for cytoplasmic defense against bacterial entry. To gain further knowledge about how their expressions are regulated in murine macrophages, we investigated the expression of NOD1 and NOD2 mRNAs after stimulation with various endotoxins, lipopolysaccharide, lipoteichoic acid and peptidoglycan. In macrophage RAW264.7 cells, the first and second rises in NOD1 and NOD2 mRNAs were observed at 2 hr and at 8-12 hr after endotoxin treatment. Increases in NOD1 and NOD2 mRNAs at 2 hr in lipopolysaccharide-treated RAW264.7 cells were reduced with the use of NF-kappaB inhibitor, caffeic acid phenethyl ester. In RAW264.7 cells, lipopolysaccharide-induced increases in NOD1 and NOD2 mRNAs were inhibited with anti-TLR4 antibody, and partially reduced in peritoneal macrophages obtained from TLR4-deficient mice. Furthermore, NOD1 and NOD2 mRNA expressions in RAW264.7 cells were increased by the treatment with proinflammatory cytokines, tumor necrosis factor-alpha (TNF-alpha), interleukin-1beta (IL-1beta), or IL-6. In TNF-alpha deficient macrophages, the expression of NOD molecules was minimal at 12 hr, and the second rise in NOD mRNA seen in lipopolysaccharide-treated RAW264.7 cells was inhibited with anti-TNF-alpha, but not with anti-IL-1beta or anti-IL-6 antibody. These observations suggest that immediate response of NODs to endotoxins could result from NF-kappaB activation via TLR signaling, whereas the second rise in NOD mRNAs might have resulted from TNF-alpha production possibly through NF-kappaB, TLR, and/or NOD signalings.